rs50156455 SNP Detail

Summary

• ID
  rs50156455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:121213436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCGCAGG CAGCCCCGGA
  AACAAAGGGC GGCAGCCTAG GGCTTGACGC GACCTCTGGG GTCATGCGTA GCAGAGCGGC
  TAGAGGCCAG CAGCGGCGCC TTCCTGCTAC TTGGGGCCCA GGCGCCCTCC ACGGGATCGC
  GCTCGTCTGG TCTGCTGCAG AGGGGGGCGC AGCAAGGATC AGAAGGCTTG GCCCCCACCT
  Y
  CCTCAAAGTG CCCTCTAGAG CTCTCCCCTA GAGGCCTGTA ATCTGAGAGT GACCCGAATT
  CACCGGGTTT ATTCGGATCT CAGGGCCACT GGTTGTGGAC CCCTGATGGG TGAGGTTAGA
  GGGCCAGGGC AGCAACCCTA GCCAGGCGCG ACAATGGCTC CTACTGTGCG TACCTGCGGA
  CTAGGACCTG AGGATCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376271969	MGP_WTSI_8_123010597	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs50156455					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376271969	MGP_WTSI_8_123010597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121213436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21144	CpG island 21144	within coordinates
Gm51556	predicted gene, 51556	580 bp downstream
Gm63872	predicted gene, 63872	983 bp upstream
Gse1	genetic suppressor element 1, coiled-coil protein	Intron
Rr401178	regulatory region 401178	206 bp upstream
Rr671531	regulatory region 671531	508 bp distal
Rr671532	regulatory region 671532	27 bp distal
Rr671533	regulatory region 671533	5 bp proximal
Rr671534	regulatory region 671534	493 bp proximal
Rr671535	regulatory region 671535	1260 bp proximal
Rr671536	regulatory region 671536	1352 bp proximal
Rr671537	regulatory region 671537	1709 bp proximal
Tssr79753	transcription start site region 79753	451 bp upstream
Tssr79754	transcription start site region 79754	917 bp upstream
Tssr79755	transcription start site region 79755	955 bp upstream
Tssr79756	transcription start site region 79756	1482 bp upstream
Tssr79757	transcription start site region 79757	1509 bp upstream
Tssr79758	transcription start site region 79758	1535 bp upstream
Tssr79759	transcription start site region 79759	1719 bp upstream
Tssr79760	transcription start site region 79760	1794 bp upstream
Tssr79761	transcription start site region 79761	1845 bp upstream