rs50154488 SNP Detail

Summary

• ID
  rs50154488
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104516224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG GAGGTACAGT AGCAGGAAGG
  K
  AAGGGAAAGA AGATGAAGCT AGGGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147152849	ENSMUSSNP4364733	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50154488					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104516224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12000	CpG island 12000	398 bp distal
Rr562107	regulatory region 562107	272 bp distal
Rr562108	regulatory region 562108	954 bp proximal
Rr562109	regulatory region 562109	1466 bp proximal
Tcp11l1	t-complex 11 like 1	Intron