rs50153584 SNP Detail

Summary

• ID
  rs50153584
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108668427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACTTCC CCCTGAATGT
  ATTTCCTATA TCTCCATGTC CTTTTCCCCT TCAGTTACGA TCTATTGTCC AGGCACATCC
  TTGAGCCCCC GACTTTACAT TACCTGGGGG CTGCTCTCTG CTCAATATTG TTCCTGCTGG
  GGCTTGCATC CAGGGCCGTC TGTAGGCTAA GCGTGGTGGC TGGAAGGAGA CTGTCTTCCA
  Y
  AGGTTCATGT ATTGGAGCAC TTGGTCCCCA GATCGTGCCT CCGTTTCTCT GTTTGGGGAG
  ATTTAGGAGG TGTGGCCTTG CTGGAGGAAG GGTGTCACGG GGGGGGGGGG CAGGCTTTGA
  GAATTTTAAG ACTTGTGTTA TCCCAGGTTC CCTTTTTGTT GTTGTTGATG CTCTGGCTGC
  AACGTTTGCT GCTTGCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135585702	ENSMUSSNP3131547	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50153584					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108668427 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aknad1	AKNA domain containing 1			Intron
				mRNA-UTR
Rr583305	regulatory region 583305			861 bp distal
Rr583306	regulatory region 583306			1339 bp proximal