rs50153438 SNP Detail

Summary

• ID
  rs50153438
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54622730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGAACAA TAGGAAGGTT
  CCACGATTCA GGGACAATCA AGAACACTTT TCTCGCCTGT ATTCACCTTG AGCCTACTTC
  CTTGTCCTAG CCCAATGTCA AAATCTTGCC TGAGCCTACT CCCTCGTCCT AGCCCAGTGT
  AAATATTGTC AATATCCCTG AAGCAGCACC AAGAGCTCTC CACAATGCAA GAGACAGATC
  K
  AGGGAGGGCT GCAGGCCATT ACCACGCCAG CCCAGAGTGT ATTTCTCATA GCCTTTTTAT
  ACTTGAGTAC TGTGAGAAGC AGAGCCACAA GCTAACAGAA ACAATTCGCT GAGATATACA
  CACAAGACAT TTGTTCCCAT CCAAAAGCCT CTCTATTCCT TCCACCAAGG TCAATAGAAT
  CTTTAGCCCC TCGCCTTAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149030208	ENSMUSSNP1959302	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50153438					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54622730 () rs orientation: forward

Symbol	Name	Function Class
Rr403785	regulatory region 403785	964 bp upstream
Rr480227	regulatory region 480227	653 bp proximal
Rr480228	regulatory region 480228	751 bp proximal
Rr480229	regulatory region 480229	1371 bp proximal