rs50147520 SNP Detail

Summary

• ID
  rs50147520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:63805436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTTATTT TAAGCCCTAC
  TTGGTCCCAA GAAAAGCAAC TCCATTTTAA ACTTTTATTA ACAGTGATCT GAATTCTAAT
  CAGTTTATTT ACATAGCAAG TAGCTCTCGA TCGCGCTGCG AAATAGGGAT GCAGTCTAAG
  AAAACATAGT AACAACAAGT TATAGCACCC ACTAGAAACC GCTGGAGATT TGTACTCTTA
  Y
  CAAATGCTCC CCTGGGTGCA AACAAATGAA ACTTAAAAGA CGGGAAGAGG TTTTTCAAGA
  CACAATTTTA AGTCGTCAAC AGACGGCTTA AGAAAGACTA GTCTGCAATA ATGCGTCTTA
  AAACATTCAT TTTCTGAACA AGATCATAAT GCCAGCAGTA AGCAACCCAC ATCTTAAAAA
  GCAACGTCTC TGTTGACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60416445	NES15918966	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50147520					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60416445	NES15918966	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63805436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13219	CpG island 13219	628 bp proximal
Plch1	phospholipase C, eta 1	Intron
Rr577600	regulatory region 577600	1785 bp distal
Rr577601	regulatory region 577601	528 bp distal
Rr577602	regulatory region 577602	224 bp proximal
Rr577603	regulatory region 577603	1348 bp proximal
Tssr33440	transcription start site region 33440	1381 bp downstream
Tssr33441	transcription start site region 33441	1395 bp downstream
Tssr33442	transcription start site region 33442	1422 bp downstream