rs50147007 SNP Detail

Summary

• ID
  rs50147007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174333545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAACGGC TCTGAAAAGG
  CGAAGAGAAG GTCCTGCCCC AACGGATGGA GCACCGTGGA ATAGTTGTCT CAGCTTTGAA
  AACACAGTGA TACTGGATTA TAATGATGGG CAGAGAGAAA CGAACAGCTT TCAACCCAGC
  CTGGCCCGTG TGGCCCATGT GGCCCGTGTG GCCCGGCGTA AAAAGGTGGT TTACATCAGC
  Y
  TTTTGGGTCC AAAGGGAGAG GAGGGGGGCA GTGAATGGAA TGCTGGGATA GGCAGCGAAG
  AGCCTGGGGG AGGGGGCACA TTGGATCACC CCAGGCGATG TGACAAAATC AACCCAGATC
  AAACAGAGAG AAAACACTAG AAGCCAAAAG GCCTGTAAAG ACCCAAGTGA ATATTTAGGA
  CAAATATATA TTGAGAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss148344096	ENSMUSSNP1532606	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs50147007					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174333545 () rs orientation: forward

Symbol	Name	Function Class
Rr572141	regulatory region 572141	1204 bp proximal
Rr572142	regulatory region 572142	1307 bp proximal