rs50143664 SNP Detail

Summary

• ID
  rs50143664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122211409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACGAGCTT GCACCCACAG ACAAGGCCAG AGCTTTTGAA
  TATTGTGCGA TAACGTCTTC TGCCGGCTCG GACTCACAAT CCACTGGAAC AAACTTAATG
  Y
  TCTGGAACCA GGTCACCTTT TAAAGGCGAC TTCAAAGCAA AACTAAACCA GTGGCCCTTT
  CACCAGTGAC ATCGGTGAAG GGTTAAGCGG GGTTATTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135741261	ENSMUSSNP2824968	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320911457	CHEV_3_122120678	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50143664					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122211409 () rs orientation: forward

Symbol	Name	Function Class
Bcar3	breast cancer anti-estrogen resistance 3	1997 bp upstream
Cpgi13768	CpG island 13768	1793 bp proximal
Rr397985	regulatory region 397985	1821 bp upstream
Rr584325	regulatory region 584325	1051 bp proximal
Rr584326	regulatory region 584326	1581 bp proximal
Tssr31494	transcription start site region 31494	1979 bp upstream