rs50142850 SNP Detail

Summary

• ID
  rs50142850
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153431433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGAAAG ATTGAACACT
  CTTGGTCTTC AAAAAAGAAG CCACAATCTT CACACAATGT GACATTGTGC ACAGCATGTG
  TAGCATATGG GCACATAAAC ATATGCAGCT GTGACTGTTG TATTCTGTTG CAAGTTCGTA
  AAATGCTTAT GTACACAATG TATAAAGATA ATGTTCATGT GTGTACACCT ATGTACAGAG
  W
  ATGATGCACA GGACTTTGCT ACTCACTACT ACTATCTTGG AATTTAGAGA ACTCAGTTAA
  AATTTCAACA ACCAAGTTAC ATATTAGCTT TTCCTCTTAA GTCTGGACAT CTAGGAAGGT
  CCTGACCTCC ACCATGAACT GTCCTGTGTT AAAGAGCAGT GCAGATTTAC CCAAGAGGTG
  ACATGGGCAA ACTGGAACCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136111710	ENSMUSSNP722897	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50142850					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153431433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13961	CpG island 13961	298 bp distal
Rr587739	regulatory region 587739	1884 bp distal
Rr587740	regulatory region 587740	633 bp distal
Rr587741	regulatory region 587741	132 bp distal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	629 bp upstream
Tssr32435	transcription start site region 32435	1883 bp downstream
Tssr36240	transcription start site region 36240	617 bp upstream