rs50141039 SNP Detail

Summary

• ID
  rs50141039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141293667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTGCCC TTCCCCATAG
  TCTAAATCTT TGCTTGTTTG TTCTGCTTTT TTTGCCCCCT GCATCTGGGA GAGGAAACGT
  ACCTAAGCAT ACACATGTGT GCAAACACAC AGACACAGCA GATCCATTCA CAGGCAGGTG
  TATATAGAAA ACCAATTATA AAAAGAACAA TGCATTAACA TGCACACTAT AGAGCAAAAT
  Y
  CATTCTCTCT GGAATATTTG CTCATTGAGA TACAAGGAGT TTATCTTTGG CACAGTGGGC
  CTCAACTAAT TGAGATGTTA TTTTTCAAAA GTCGGCTGCA AAGATTGAGG GAGAGGATGC
  TGTTGCAAAA TTGCCAGGTC TCAGGAAAGC TTTCTTTAGT GAAACTCCAG CATCCTGCCC
  GGTTGCAGAT CTAATCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092040	NES16588671	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T		C	T	T	C		T
ss320993565	CHEV_3_141250870	CHEVERUD	SCREENING_POP	f	SNP					C					T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50141039					SNP	T	C	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092040	NES16588671	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141293667 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			1526 bp proximal
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant