rs50139984 SNP Detail

Summary

• ID
  rs50139984
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116125229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTCCAG CCTTCTCTTG
  CCATTAGTGA GCTACCCCAC ACAGTCAATA GATGCCGTTC ACTTAGCATG GTATCAGGAC
  ATTGATATAA TGATGATGAC AGTAATAATA CCTAATTTTA TTGATCACTT GCTATGTCCC
  CAGGCGCCAA AGTACTCTAT CTGGATTATC TCACTAAACC ACACAGTTAC AGAATAACTA
  R
  TGCCTGGATA GCTTACCATG CACACATAGC TAGCCAGCGT TTACACCCTG TAAGTCACAC
  TCTAGCACCT GTGTGGGTGA TTGTTTCAGG TAAGGCTCAA TCAACGCCAT TCCATTTATC
  AGGACACCAA GTAAGAGAAC AGGACAAGCT TTTTTATTAG AAAGAAAGAA AGAAAGAGAG
  AGAGAGAGAG AAAGAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60437496	NES15945746	PERLEGEN	MM_PANEL2	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs50139984					SNP	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437496	NES15945746	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116125229 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc14a	CDC14 cell division cycle 14A			Intron
				Noncoding-Transcript-Variant
Rr375619	regulatory region 375619			713 bp downstream
Rr397962	regulatory region 397962			406 bp upstream
Rr583694	regulatory region 583694			1694 bp distal
Rr583695	regulatory region 583695			291 bp proximal
Rr583696	regulatory region 583696			417 bp proximal
Rr583697	regulatory region 583697			643 bp proximal
Rr583698	regulatory region 583698			1724 bp proximal
Rr583699	regulatory region 583699			1828 bp proximal