rs50139804 SNP Detail

Summary

• ID
  rs50139804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99565742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCACCAG ACGGATCCCA
  CCACACTTTG CTCTCTCTAA GCCACACTGG GCCAGGAGGT GAACCTTTAA GCAGAAGAGG
  AAGGTGGACG AAAGGTAGAG CATCAGTCCA CCATTTCTGG TCTTCCCAGC AAAAGGACAG
  ACAGAGAAGC GGGCAGGCTT TCAAGTGACC CCACCTACCT GCCGTTGCGG TCTTCGCTGA
  Y
  TTGGATGCAG AGGCGTTAGC TGCGTTCTTG GTCTCCTTGT CCTTCTCTTC TCCGCGTGTG
  GCTTTGACCT CAGGAGTGGT GGTGGTCTTT GTAGCTTTTT CCACGGATTC TTTCTTCTTG
  GGAGAAGCCA CTCTGGACAC CTTGTCGGAG GATTCCTTCA AAGCTCCTGG TTTGGGGGAA
  GCTGCTAAAG GCTTGGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52684847	NES15534654	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50139804					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684847	NES15534654	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99565742 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-Synonymous
Tssr4149	transcription start site region 4149	358 bp upstream
Tssr123695	transcription start site region 123695	1896 bp upstream
Tssr123696	transcription start site region 123696	657 bp downstream
Tssr123697	transcription start site region 123697	847 bp downstream
Tssr123698	transcription start site region 123698	978 bp downstream
Tssr123699	transcription start site region 123699	1069 bp downstream
Tssr123700	transcription start site region 123700	1094 bp downstream
Tssr123701	transcription start site region 123701	1152 bp downstream
Tssr123702	transcription start site region 123702	1172 bp downstream
Tssr123703	transcription start site region 123703	1224 bp downstream
Tssr123704	transcription start site region 123704	1275 bp downstream
Tssr123705	transcription start site region 123705	1583 bp downstream
Tssr123706	transcription start site region 123706	1801 bp downstream
Tssr123707	transcription start site region 123707	1990 bp downstream