rs50139743 SNP Detail

Summary

• ID
  rs50139743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107161336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TAGGTGGTCT ATCTCTGCCT CCTGTATCAT TTGCTTTCTG
  ATACAGCAGC AGAGATCAGG GACAAGCTGT ACACTCCCTT TTCCTTTTCA TAAAAAGTGT
  R
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTCCAGG TGCCTGCAGA GGCCAGAAGA
  AGGAGGCAGA CCCCGTGGAG CTGGAGTTAT AGGCAGTTGT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147176986	ENSMUSSNP4882628	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50139743					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107161336 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dio1	deiodinase, iodothyronine, type I			Intron
				Noncoding-Transcript-Variant
Rr596967	regulatory region 596967			742 bp distal
Rr596968	regulatory region 596968			292 bp distal