rs50137931 SNP Detail

Summary

• ID
  rs50137931
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90397793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTCCCTTC TTCCATTCTG TCCTAAAATA TCCCCAGAAA
  TTGGAGTCCT TGGGTAGTTC TGATATTGAG AAGCAAGTGA CAGAAACTTA GCCTAAAACC
  Y
  GGGGAAACAA AGTTCCCGAA AGTGAGATCA GGGATTCTAG GTATCCTGGC TGCTCACTCA
  CCTGTAGCTA GGTTGTCAAT TTGTTCCCGG AGCTCTACTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424444	NES15924368	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50137931					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424444	NES15924368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90397793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13464	CpG island 13464	266 bp proximal
Rr397812	regulatory region 397812	512 bp upstream
Rr580375	regulatory region 580375	537 bp proximal
Rr580376	regulatory region 580376	552 bp proximal
Rr580377	regulatory region 580377	664 bp proximal
Rr580378	regulatory region 580378	988 bp proximal
Snapin	SNAP-associated protein	Intron
Tssr34231	transcription start site region 34231	1329 bp upstream
Tssr34232	transcription start site region 34232	231 bp downstream
Tssr34233	transcription start site region 34233	296 bp downstream
Tssr34234	transcription start site region 34234	489 bp downstream