rs50135548 SNP Detail

Summary

• ID
  rs50135548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153387772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAAGAC CTCAGGGCAC
  TCACCCCCAC TGCTTAGCTG TGTGACCCTG GGCAGAAGAA TTGACATCTC TGGGCTGCGG
  GGTTTGGCCT ATGAAGTAAG GAGTGTGGCT AACTGCCTGG GCCTTGAGTT CATAATGTTC
  TTTTCCCTTT CTGTCCACCA TCCCCCTGGC AGCCTGAGTT TCTTGTGTTG ATACTGATGC
  Y
  CTGAGCTCCC TTGAACTCCA AAGCCTATTT CTTCAAGTTG CTCCGTGCCT CTTCAACTTT
  GCCATGCTCC CTTCTGCACC TGCCAAGTCT CCCCTGGGCA CTTGCAGGAC CCCCTCAGAC
  ATCAGATTGA TCACTCATTC CATTTTAGGC ACAATATTGG TGGCTAGTCC TTTCTGAGAG
  CACAGTGCCT TCTGCCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147996089	ENSMUSSNP5096229	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50135548					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153387772 () rs orientation: forward

Symbol	Name	Function Class
Gm75205	predicted gene, 75205	1384 bp upstream
Gm75218	predicted gene, 75218	1190 bp downstream
Rr567675	regulatory region 567675	1571 bp distal
Rr567676	regulatory region 567676	732 bp distal
Rr567677	regulatory region 567677	894 bp proximal
Rr567678	regulatory region 567678	1395 bp proximal