rs50128840 SNP Detail

Summary

• ID
  rs50128840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151194356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGA TAGAGCCATG CTGACAGCAC
  Y
  GCCAGTTCTG GAGCTGCAGC ACAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148064562	ENSMUSSNP3181268	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321431609	CHEV_4_150484008	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50128840					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151194356 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi15366	CpG island 15366			663 bp distal
Rr605508	regulatory region 605508			1334 bp distal
Rr605509	regulatory region 605509			833 bp distal
Tssr44784	transcription start site region 44784			1622 bp upstream
Tssr44785	transcription start site region 44785			1353 bp upstream