rs50127834 SNP Detail

Summary

• ID
  rs50127834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152592098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAAGCA TCTCACAGGA
  CTGGAGAGGT GGCCTAGTGA GGCAGAACTT GCTGTATATG CCTAGGAACC TGAGCACAGG
  TGTGACAACC TGAGTTCAAA TCCCCAGATC CCCATAAAGC CAGACATGAA GGGTGAGCAC
  TTATAATGAC AGACAGCATC CCTCCCCTCA GCAAGATGGG AGGTGGAGAC AGGGTCCACT
  Y
  GGAACCTCAG GAAGTCTGGC ATCTGGAACT GTCCTAAACA AGGTAGAAGT TGAGGACTGG
  CATCTGAGGT TGTCCTCTGA CTTCAACAAG CATGCTGTGG AGTGTACATA CTTGAAACAT
  ACACACACAC ACACACACAC ACACACACAC ACACACACAT GGGTGGATTT AGAGGACCTT
  CCACACAGTT GTATTGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136104390	ENSMUSSNP6417942	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321029040	CHEV_3_152549425	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50127834					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152592098 () rs orientation: forward

Symbol	Name	Function Class
Rr587620	regulatory region 587620	397 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron