rs50125962 SNP Detail

Summary

• ID
  rs50125962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142147586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGTTAT ATGGGACAAA
  CCTGGAAGAG GCATGTAGTT TAGCTGGTTT AGATTCTTAC ATTTTGGCTA ACTTGAGCTA
  ATGGTATAAT TATGCACAAA TCACCCACAT ATTCTAAGAC CTTGAAGGAG ATCAGCCTAA
  TGAGCATTTC TCAGCCTACG AGACACAAAT TTGGAGAATT GTGTCTACTG AAGTCAGAGG
  R
  CCATATGTAA CTATGATCAT ATATGATCAT ACATAGTTAC ACATGTAACT ATGATCCAGA
  ATTGTCTGTT CAGATGAAAG TCATGGAGAG ATGATGTTTG AGAGGACCCT GGACTGTTCG
  GGTGGCTGAT AATTCACTCA CAACCTTTTC CTCTGTCTTC TATATTTATT AAGAGTATTT
  GACAAGAATA AAACCAATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136013509	ENSMUSSNP5886679	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321001613	CHEV_3_142104789	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50125962					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142147586 () rs orientation: forward

Symbol	Name	Function Class
Gm64781	predicted gene, 64781	144 bp downstream
Rr586432	regulatory region 586432	1083 bp distal
Rr586433	regulatory region 586433	392 bp proximal
Rr586434	regulatory region 586434	1110 bp proximal
Rr586435	regulatory region 586435	1715 bp proximal