rs50124637 SNP Detail

Summary

• ID
  rs50124637
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116454642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATCTCT TCTCAAAGTC
  AGAATTTGGA ATGACTCTTC TGGAGGCTGA CATGAGCTCT AAGTTTGATC CCTACTATCT
  CATCAAAAAA ATATTTTACA GAGCAAACCA GACAAAAATC CAAACATTAT AAAAGGTCTG
  CTCCTGCCGG GTATGGTGAC GCACGCCGTT AATCCCAGCA CTCGGGAGTC AGAGGCAGGC
  R
  TATTTCTGAG TTCGAGGCCA GCCTGGTCTA CAAAGTGAGT TCCAGGACAG CCAGGGCTAT
  ACAGAGAAAC CCTGTCTCGA AAAACCAAAA AAAAAAAAAA AAAAAAAAAA AAAGGTCTGC
  TCCTTAATTA TCTTGCTTCT TGTCTTTTGC AAAGATTGGT CTTAAATAGC ACCTGGTTTT
  TGAAAATATG CTTCGTTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135670758	ENSMUSSNP3465079	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50124637					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116454642 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13738	CpG island 13738	777 bp proximal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	Intron
Rr397966	regulatory region 397966	1507 bp upstream
Rr583758	regulatory region 583758	441 bp proximal
Rr583759	regulatory region 583759	1674 bp proximal
Tssr31364	transcription start site region 31364	768 bp upstream
Tssr35323	transcription start site region 35323	1652 bp upstream
Tssr35324	transcription start site region 35324	1099 bp downstream
Tssr35325	transcription start site region 35325	1277 bp downstream
Tssr35326	transcription start site region 35326	1544 bp downstream
Tssr35327	transcription start site region 35327	1561 bp downstream
Tssr35328	transcription start site region 35328	1578 bp downstream
Tssr35329	transcription start site region 35329	1597 bp downstream
Tssr35330	transcription start site region 35330	1650 bp downstream