rs50124340 SNP Detail

Summary

• ID
  rs50124340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:67512444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATGTGG TGGGTTCGCA
  CCACTTCGTC GCAGCGCAGG CTTTGGTCTC CCTTGTCCGT GCGGCGCACG CCCACCGAGT
  TTACGCACCA GCACACCGAG GTCTGGTTGC ACTGGCGCGC CTTGAAGCGG CCCTTGTCGT
  CACACTCCGG GTCGTAGAGG CCATCGTTGT CCAGTATCGC GTGCTCGCTC GGCATCACCA
  R
  GCTGCGGCCG CTCTTCCGGG CGCTCATGCG CGCCTTGAGC AGCAGGCACT TGGAAGTTAG
  CGTGGAGCAG TCGACCAATA CCTGTGAGCC CATTGCCCGA CATTGGCAGA CCCCGCCTGG
  GCCATTTGTG TCGCAGACCG TCATCTTGTT GGTGGGGCAT GTACAGTTGC TCTGAGCCGT
  GCAAAAGCGG GTCGCCATCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60894261	NES15959604	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50124340					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894261	NES15959604	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67512444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	within coordinates
Gm42889	predicted gene 42889	within coordinates
Rr631667	regulatory region 631667	1664 bp distal
Rr631668	regulatory region 631668	648 bp distal
Rr631669	regulatory region 631669	205 bp distal
Rr631670	regulatory region 631670	325 bp proximal
Rr631671	regulatory region 631671	326 bp proximal
Rr631672	regulatory region 631672	498 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	Coding-Synonymous
Tssr1870	transcription start site region 1870	1991 bp downstream
Tssr1871	transcription start site region 1871	1642 bp downstream
Tssr1872	transcription start site region 1872	679 bp upstream
Tssr61254	transcription start site region 61254	1797 bp upstream
Tssr61255	transcription start site region 61255	715 bp upstream
Tssr61256	transcription start site region 61256	234 bp upstream
Tssr61257	transcription start site region 61257	225 bp downstream
Tssr61258	transcription start site region 61258	323 bp downstream
Tssr61259	transcription start site region 61259	368 bp downstream