rs50119808 SNP Detail

Summary

• ID
  rs50119808
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42029074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCATCCTAT TGGAAACAAG CTTCAAGTGC ACGATTTCCA
  ATAAAGTGGG AATAAACATT TTTCCTTTAC CTGACTGTTG GACGAACCAA GACTCAAGTA
  W
  GGGTGGCCAG CAGATGGCAG TATAACCCCA CTTTTTTTAA TTCCATGGCC GCACATGGAT
  CTGAAAATAC AGGCTTTTTT TTTTTTTTTT TTTTTAAAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60395655	NES15895195	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	A	A	A		T	T	T		T
ss135047797	ENSMUSSNP6957663	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
ss320730612	CHEV_3_41878561	CHEVERUD	SCREENING_POP	f	SNP									A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50119808					SNP	A	A	T	A	A	A	A	A	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60395655	NES15895195	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42029074 () rs orientation: forward

Symbol	Name	Function Class
Rr576014	regulatory region 576014	within coordinates
Rr576015	regulatory region 576015	3 bp proximal