rs50119784 SNP Detail

Summary

• ID
  rs50119784
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127645576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCATGAA GGCTGATTGT
  GTTTAGAATG AAGCAAGACT AGAAACATCT TTGAGATAAT GTCTTAAAGG CCTTCACTAC
  TGTGATGGTC TGTATATGTT TGGTCCAGTG AATGGCACTA TTAAGTGTGG CCTTGTTGGA
  GAAGGGTGTA TCACTGTGGG CGTGGGCTTT AATACCCTCA TCATAGCTGC CTGGAAGCTA
  R
  TCTTCTCCAG ATGAAGATGT AGAACTCTCA GCTCCTCCTG CACCATATCT GCTTGGATGC
  TGCCATGCTC CTGTCTTGAT GATAATGGAC TGAATCTCTG AACCTGTAAG CCAGCCCCAA
  TTAAATGTTG TCCTTATAAG AGTTGTCTTG GCCATGGTGT CTGTTTACAG CAGTAAAACC
  CTAACTAAGA CAACTACCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873095	ENSMUSSNP1398080	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320957500	CHEV_3_127554845	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50119784					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127645576 () rs orientation: forward

Symbol	Name	Function Class
Rr584881	regulatory region 584881	1453 bp distal
Rr584882	regulatory region 584882	1488 bp distal
Rr584883	regulatory region 584883	within coordinates
Rr584884	regulatory region 584884	840 bp proximal
Rr584885	regulatory region 584885	1477 bp proximal
Rr584886	regulatory region 584886	1585 bp proximal