rs50118374 SNP Detail

Summary

• ID
  rs50118374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150019004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGTGGC TTCTAAGCCA
  GCTCATCCCT CTGCTGCCCC ACTGCCCACC CTCCCCTGTG GCTGTCTTCA GGTCTGAGCT
  AACATCTCAC TGAGCCTGTA GACCTTCCCT CTGGACCCCA CTGTCACCTG CTCTTCCTCA
  CCCTGACACG TTCTGTCCAG CTTCTCCGGC CTTCAGTCTC AAACTCAGGG TCTTTGCACC
  R
  TTCAGAGGGC TAGCCCTCTG TTCCAACATC AATCACCACA GAGGCCTGGC AGCCATCGTT
  CATGATAGCA TTTGTGTCTG GCCCAGCCCT CCTATCTCAG GAGACCATTC CATGCTTCTC
  CAGGGACATC AGCTTAAGAC TCCATCTTTA CCAGAACAGT CATTCTATGA GGGCATGCAT
  GTCGTCTTGC TCTCTGCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148043485	ENSMUSSNP6190677	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50118374					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150019004 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr377412	regulatory region 377412			1833 bp upstream
Rr605111	regulatory region 605111			357 bp distal
Spsb1	splA/ryanodine receptor domain and SOCS box containing 1			Intron
				Noncoding-Transcript-Variant