rs50116708 SNP Detail

Summary

• ID
  rs50116708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152774878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGGTAG CATTGCTCCC
  CTGAAGCTCC CTTGATCCTA GATTCCAGGT TCCAGCAGGA TCAATGTCCA GTCTCTCACA
  CAGGTGAATG ACAGACAGCA GCGTTTGCTA GCTGACTCCT TTCTGAGTGT CACTTCCCTC
  TGTCCCAGCA ATGAGCTCCT TCCAAATCCT CCATGCTGGG CATGTTTTTA TTATCTGTCC
  Y
  TGTCCCTTCT GCTTGTCTTG CTCTTAAGAC CATGTTTCCT TCCTTTCTGC ATTCTGAACT
  AGAGAGCTTG CTTAAAATAT CTACAATGGG TAATGTTTCT ATTCAAGACT GGTTGCTGTT
  GGCCACTGTT TGAGGCTTGG GACCACAATG ATATGTTACA ACAATAATCA GAGCCATGCT
  GCCACACTGT GTGCACAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136105981	ENSMUSSNP222516	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321029713	CHEV_3_152732205	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50116708					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152774878 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm40182	predicted gene, 40182	within coordinates
Gm66501	predicted gene, 66501	719 bp upstream
Rr587647	regulatory region 587647	1893 bp proximal