rs50116680 SNP Detail

Summary

• ID
  rs50116680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151793254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCAACCC CACAGGTAGA
  CCAGTGGTGC CAGCTAACCT GGACCCCTGG GAGCTCCCAG AGACTGAGCT AACAACCAAA
  GAGCATGGGC TGCTCAGAGG CCCCTCACAT ATGCAGCAGA CAGAGGACTG CCTTGTCTGA
  CCTCAGTGGG AGAAGGTGCC TAATCCTACA GGGATTTGAT GCACCAGGAT GGAGTGATAT
  R
  GGGGGGGGGG GGCGGAGACC CCTCTCAGAG GTGAAAGATA GGGCACTTGG GGGAGGAACT
  CTGAGAATGG GAACCAGGAG GGGGCAGCAT TTGGGATATA AATGCATAAT TTTTTTTAAA
  TTTAGAAAAC CAATACAACA AAACAAAGAG TGCTGCTCAG GGAAGGCCTT CCCCTTAGGC
  GTGGAAGACA CTTATCCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136100643	ENSMUSSNP5616341	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50116680					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151793254 () rs orientation: forward

Symbol	Name	Function Class
Gm31881	predicted gene, 31881	within coordinates
Rr587443	regulatory region 587443	1541 bp proximal
Rr587444	regulatory region 587444	1788 bp proximal