rs50115566 SNP Detail

Summary

• ID
  rs50115566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142147280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGACTT TGCCTCTGTA
  GATTGCCAGG TTCTTATCTA GGTCACCGAT GAAAGTATCA GACAGAAGCA GGCCTCGGTT
  TGACACCTGC TAAACATTAT TTAAGTCTTA AGACTGACAT CAAACCACTT GTACCCATTC
  TATTTATAAC TTTCCTAATC AGCTTCCTGA GTTTCCAGAT GGAGTGTAGG AATGTAATCA
  Y
  ATTCAGCAGA TAACTTTGCC TGAAGACAAA GTTCCCTGAG TGACCAGAGG GATTTCCTAT
  CAATGATTTC ATTTCAATGT ACTGTCATCT ACAATTTTGT GACAGGGAAA GTTATATGGG
  ACAAACCTGG AAGAGGCATG TAGTTTAGCT GGTTTAGATT CTTACATTTT GGCTAACTTG
  AGCTAATGGT ATAATTATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61087280	NES16608344	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50115566					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087280	NES16608344	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142147280 () rs orientation: forward

Symbol	Name	Function Class
Gm64781	predicted gene, 64781	450 bp downstream
Rr586432	regulatory region 586432	777 bp distal
Rr586433	regulatory region 586433	698 bp proximal
Rr586434	regulatory region 586434	1416 bp proximal