rs50109925 SNP Detail

Summary

• ID
  rs50109925
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108385010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAACGACCA GCACCTAGTT ACCAATTTTT TGAGTTAGTA
  CTTGAGCTCT GAGACTCAGA AGGATAAAAT GGCTAAAGAT TAAAAATAAA GTCTTAGCCG
  K
  GGCAGGGAAG GGACTTCGCG GGGCCTGGAG GGAACATGAA TGGTTCAAGA GAGGAGCTGA
  GAGGCCAGAG GAAGGCGCAG TTATGGATAG GATAGGGAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133501752	ENSMUSSNP578365	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50109925					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108385010 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636092	regulatory region 636092	142 bp distal
Rr636093	regulatory region 636093	28 bp proximal
Rr636094	regulatory region 636094	61 bp proximal
Rr636095	regulatory region 636095	289 bp proximal