rs50106410 SNP Detail

Summary

• ID
  rs50106410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127646388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGCTCC CTGGCTGTCT
  AGCTCACCAC ACACTCTGCA TAGCTCAAAA ACTATAAGGT TTATTTTGGG GGGAAAAAAG
  GAGGATGAGA AGAAGAAGAA ATAAATATAC TAATATCTAT CAAGATTCAG TGAACTATAA
  CAGATTTAAA TTTCAGTGTT CAAAAGCAGT TTTGCTGGAG TGGAACAATG GTCATCTCTT
  Y
  CCAATTGGTC TGACTTCATT CCCGCCCCCC CCCCCAAGGA TTTTAAAAAC TGCATCAGAA
  GTCGCATGAC TTGTGAAGAT GTTAACCGTC TGGCCCTTTA CGGATATGGC TCACTCTCGT
  GCATTTATTG CTGAGGCAGC AAAGGCTGCT CTGCTTTCTA AGGCGACTTC CCCAGTAAGG
  AAGACGGAAA ATGGCAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873116	ENSMUSSNP2146366	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320957505	CHEV_3_127555657	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50106410					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127646388 () rs orientation: forward

Symbol	Name	Function Class
Rr584883	regulatory region 584883	729 bp distal
Rr584884	regulatory region 584884	28 bp proximal
Rr584885	regulatory region 584885	665 bp proximal
Rr584886	regulatory region 584886	773 bp proximal