rs50104987 SNP Detail

Summary

• ID
  rs50104987
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29693603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA CAAAAAACCG GTGTCTCCAC
  C
  TAAACAAACG TTCTGAGAGG GTTTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133091996	ENSMUSSNP894078	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321775151	CHEV_6_29643604	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50104987					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29693603 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17240	CpG island 17240	229 bp proximal
Rr627610	regulatory region 627610	188 bp proximal
Rr627611	regulatory region 627611	673 bp proximal
Rr627612	regulatory region 627612	1082 bp proximal
Rr627613	regulatory region 627613	1130 bp proximal
Tspan33	tetraspanin 33	618 bp upstream
Tssr1798	transcription start site region 1798	647 bp upstream
Tssr55283	transcription start site region 55283	578 bp upstream
Tssr55284	transcription start site region 55284	600 bp upstream
Tssr55285	transcription start site region 55285	651 bp upstream