rs50103423 SNP Detail

Summary

• ID
  rs50103423
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:41126895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCAGAGG CAAATGGGTC
  TTTGTGAGTT CAAGGCCAGC TGGTCTACAG GGCTACGCAG TAGAGACATC TGTCTCAATA
  AAAACAAACA AGCAAACACC ATCTCCTCTT GGGTGTCTCA TTGGGACCTT AAAGTCCACA
  TATCCCAAGA TAGCTCAAGA CTCCTCTCTC ACCGCAGAAG CCAGGTCAAC TACCAGGCCT
  K
  CGGAGTCTTC ATCTGCTTCA CTCCTGATAG CACTCTCTTC AAAACCACTC TGCAAATAAC
  ATTTGGCCTC TGCAAAACAT TTTCTAAATG GGTTCCTACA ACCTCCTTAA CATTCCTGGC
  TATCCATTTC ACAAGCAGCG GGATACTGTG AAACCACAAA TCTGATGAGA TGTTTTCTAG
  CCTCAAGAAC TTTGGCCTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61776190	NES17710663	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50103423					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61776190	NES17710663	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:41126895 () rs orientation: forward

Symbol	Name	Function Class
A730081D07Rik	RIKEN cDNA A730081D07 gene	within coordinates
Rr477886	regulatory region 477886	1803 bp distal
Rr477887	regulatory region 477887	1215 bp distal
Tssr119387	transcription start site region 119387	1850 bp downstream