rs50102506 SNP Detail

Summary

• ID
  rs50102506
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142752644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAC AGTTCCTCCT GTTATGGTAA
  M
  CGTCACCATA AAATTATTTA GTTGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147767857	ENSMUSSNP1731761	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss321401612	CHEV_4_142615977	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50102506					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142752644 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
6330411D24Rik	RIKEN cDNA 6330411D24 gene			Intron
				Noncoding-Transcript-Variant
Rr604143	regulatory region 604143			1115 bp proximal
Rr604144	regulatory region 604144			1375 bp proximal
Rr604145	regulatory region 604145			1579 bp proximal