rs50101270 SNP Detail

Summary

• ID
  rs50101270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135622773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCGGGGC CAGATTAGAA
  CCCAAGTTTC TGGAGTCTAA GGTCTATGCC TATGCCCTCC CCTGGCCAGA GTTCCTAGGA
  AGAGAGAATT CAACCGCAGG GCAAGAACAC TGTGGCACTG AGGACCCAGA GGGGAAGTGG
  TAACCGGTAC GGAAGGCCAG ATCTCCTCTC ACTCACTTAT CTGCACCAGA CCTCCTCTCA
  Y
  TCACTCATCT GCGAAAGTGT GAGAGCAAGA AACCCCAGGC TGGAGCTGCA GCTCTTGGGA
  CCTACGTGGG GGTCCCTGCT GGGTCTCCAG ATCTGGATAC AGAATAGCCA GGACAAGGCT
  CCACAAGACC CTGGGGCCCA GCGGCTGACA AATGACAGTG AGTGTAACTT CCTTTGTTGT
  TTTACTTCAG ACTCCTCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147553176	ENSMUSSNP1624162	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50101270					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135622773 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	mRNA-UTR
Rr602182	regulatory region 602182	1997 bp distal
Rr602183	regulatory region 602183	58 bp distal
Rr602184	regulatory region 602184	within coordinates
Rr602185	regulatory region 602185	509 bp proximal
Rr602186	regulatory region 602186	1410 bp proximal
Rr602187	regulatory region 602187	1533 bp proximal
Rr602188	regulatory region 602188	1561 bp proximal
Tssr39650	transcription start site region 39650	267 bp downstream
Tssr39651	transcription start site region 39651	66 bp downstream
Tssr39652	transcription start site region 39652	within coordinates