rs50100964 SNP Detail

Summary

• ID
  rs50100964
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144921120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAAGCCTGG CAGCAACAGG GGACAGAGCC ACCAAGCCTA
  GAGAAGATGG CTCTCTAGGG GTAAGAGAGG CGAAGAGTGT CCCCTACAAG AAGGAAAAGT
  K
  GGGAAGAGAG GGACCCTGGG GACAAACCTA ATGTCCCCAC CCAGAGGTGA CCCCAGAGGG
  GATGGAGGCA CTGAGGGAAG GGACGCCGCC CCACTAGGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147848366	ENSMUSSNP6935009	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss321412783	CHEV_4_144784453	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50100964					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144921120 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr398672	regulatory region 398672			367 bp upstream
Rr604318	regulatory region 604318			1333 bp distal
Rr604319	regulatory region 604319			within coordinates
Rr604320	regulatory region 604320			181 bp distal
Rr604321	regulatory region 604321			445 bp proximal
Rr604322	regulatory region 604322			537 bp proximal
Tssr44481	transcription start site region 44481			403 bp downstream
Tssr44482	transcription start site region 44482			417 bp downstream
Tssr44483	transcription start site region 44483			449 bp downstream
Vps13d	vacuolar protein sorting 13D			Intron
				Noncoding-Transcript-Variant