rs50098411 SNP Detail

Summary

• ID
  rs50098411
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141170512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC CATTTCCACA CCCCTGGCCA
  M
  GCTATGAATA TGACCCATCT AGAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147737101	ENSMUSSNP3819053	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50098411					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141170512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15230	CpG island 15230	1280 bp proximal
Gm42337	predicted gene, 42337	785 bp downstream
Rr603767	regulatory region 603767	1973 bp distal
Rr603768	regulatory region 603768	995 bp proximal
Rr603769	regulatory region 603769	1464 bp proximal
Rr603770	regulatory region 603770	1904 bp proximal
Tssr40079	transcription start site region 40079	1456 bp upstream
Zbtb17	zinc finger and BTB domain containing 17	1472 bp upstream