rs50097608 SNP Detail

Summary

• ID
  rs50097608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76284086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATATTCTC TCATGTGCTC
  CCTACCCTGT AAACATTTAC TGCCCCTAGC AACTGCCTAC CAAAGAGGAC AGGACGAGGA
  CAGGCATTTC ACAACAGAGA AGCCAGTTAG CTCCTTCTAG GCCAGGGAGC CAGGGTCAGC
  ATCGCAGGGG TAAGCTGTGT TGATAGATCG TACCTTCAAT ACTGCATGAT AAGAAAAGCA
  Y
  TAATTCCCAG AAAGCCCAGT CAAACCGAGA GAAAACATCA TCAGTGTCCC AGCTGAGCAC
  AGCGTCCCCT TTCCTTTATT GGCCCTGTTT AGATACCCAG TCCCAGGCTT TGCTATCTCT
  CCTAGCAATG CCTTCTGGGA CCAAGTAGCC ACCATCTCAG GGAGTCTGCT GTTGCTTTCC
  TTGTCTACAT ATGTCCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61289925	NES16900666	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50097608					SNP	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61289925	NES16900666	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76284086 () rs orientation: forward

Symbol	Name	Function Class
2610028H24Rik	RIKEN cDNA 2610028H24 gene	829 bp upstream
Rr384948	regulatory region 384948	within coordinates
Rr434267	regulatory region 434267	1513 bp distal
Rr434268	regulatory region 434268	within coordinates
Rr434269	regulatory region 434269	603 bp proximal
Tssr94175	transcription start site region 94175	866 bp downstream
Tssr94176	transcription start site region 94176	805 bp upstream
Tssr94177	transcription start site region 94177	822 bp upstream
Tssr94178	transcription start site region 94178	843 bp upstream
Tssr94179	transcription start site region 94179	869 bp upstream