rs50096901 SNP Detail

Summary

• ID
  rs50096901
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41362140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC TGCCCACAGT GCAGTGGGCT
  C
  CCCAGCGCCT TGAGACTTAC GCCTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144675469	ENSMUSSNP2607373	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322633642	CHEV_8_41994457	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50096901					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41362140 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77030	transcription start site region 77030	1192 bp downstream
Tssr77031	transcription start site region 77031	938 bp downstream
Tssr77032	transcription start site region 77032	683 bp downstream
Tssr77033	transcription start site region 77033	424 bp downstream
Tssr77034	transcription start site region 77034	361 bp downstream
Tssr77035	transcription start site region 77035	559 bp upstream
Tssr77036	transcription start site region 77036	1712 bp upstream
Tssr77037	transcription start site region 77037	1907 bp upstream