rs50094835 SNP Detail

Summary

• ID
  rs50094835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60407528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTGCAT AAGTTCCTCC
  AGGGAGCCTT CCCTCCTTTT CTCAAGGGCA TTTTGGATAT TTGCCTACCA TCTTAGCACC
  AGCTGGCTGG TGCTCTTTTC TACCATGCTG CTCCAAAAAG TACAATCCGT GTACTCCATC
  CTCCTGCACT TACCTCCATC CTACCTATAC TTAACTACTT CTGCCATAGC TCACATTCCA
  Y
  CCAGTTGCTG GAATGAATGC TGAGAAAGTC CTCAGGCGCT GGTGGTTACT AATTGTCAGT
  TAGAAACTCC CTGTCTCTGT TCTCTGAGAA AATGCTACTG TCATTCTACT TTGTTTCCAT
  TGTTGGGGAC TTGGGAACTT TTAATAATTA ACACTGAGAA GTGGTACTAG TTAATTAATT
  AATTATTTCA GGAAGGGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135219287	ENSMUSSNP932272	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50094835					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60407528 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13210	CpG island 13210	607 bp proximal
Mbnl1	muscleblind like splicing regulator 1	Intron
Rr577409	regulatory region 577409	419 bp distal
Rr577410	regulatory region 577410	582 bp proximal
Tssr887	transcription start site region 887	1754 bp upstream
Tssr29278	transcription start site region 29278	574 bp upstream
Tssr29279	transcription start site region 29279	650 bp upstream
Tssr29280	transcription start site region 29280	1107 bp upstream
Tssr29281	transcription start site region 29281	1150 bp upstream
Tssr29282	transcription start site region 29282	1270 bp upstream
Tssr29283	transcription start site region 29283	1777 bp upstream
Tssr29284	transcription start site region 29284	1870 bp upstream
Tssr33421	transcription start site region 33421	1621 bp downstream
Tssr33422	transcription start site region 33422	1718 bp downstream