rs50093639 SNP Detail

Summary

• ID
  rs50093639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41362592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAGCAAG CTTTATAGCT
  TGATGGAGAG GAACTGTATT GGAAGTAGAT GGTCAAATAG ACATTTTGAC TTTTTTGAGA
  CTCTAAAGTG CTGGGCAGTT GGGATCAAGA GTGTTTTATT AAATATCCAG TTAGTTTTTC
  TTTCAGGTAA GGAAGTGTTT GCAAAAGTCA TTTTACCTGG CAGACATCTT CTAAATCTGA
  Y
  ACTTGAGACA TAGGTTGGAA GGTCATATTA CTTATTTTTC TCAGGCTTAA ATGTTTGTCC
  CCATAAAGTG AAGATTTTGC CACGACATTA AAGAGTCACA GCATTAGGAA GGGCTAAGAA
  CCACCACTGT AGATCGTGTA AAGTCCATTT TATACAGTTC ACTCTGATAG TAAAGATACC
  CCTTGTCATA ATAAATACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60600937	NES16305541	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50093639					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600937	NES16305541	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41362592 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77030	transcription start site region 77030	1644 bp downstream
Tssr77031	transcription start site region 77031	1390 bp downstream
Tssr77032	transcription start site region 77032	1135 bp downstream
Tssr77033	transcription start site region 77033	876 bp downstream
Tssr77034	transcription start site region 77034	813 bp downstream
Tssr77035	transcription start site region 77035	107 bp upstream
Tssr77036	transcription start site region 77036	1260 bp upstream
Tssr77037	transcription start site region 77037	1455 bp upstream