rs50093564 SNP Detail

Summary

• ID
  rs50093564
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172460582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGG CCACGTAGTC TCTTGGACCC
  K
  CCCCCGTGAC GCTCCTCCCC ACCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120013327	PARCsnp_1.20742	PARC_SEQ	INBRED	f	SNP			T	G
ss120015553	PARCsnp_1.10922	PARC_SEQ	INBRED	f	SNP			T	G
ss146197868	ENSMUSSNP5146879	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320126699	CHEV_1_174563146	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50093564					SNP	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172460582 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	78 bp upstream
Gm35601	predicted gene, 35601	14 bp upstream
Rr396594	regulatory region 396594	within coordinates
Rr423641	regulatory region 423641	377 bp distal
Rr423642	regulatory region 423642	236 bp distal
Rr423643	regulatory region 423643	within coordinates
Rr423644	regulatory region 423644	42 bp proximal
Rr423645	regulatory region 423645	790 bp proximal
Tssr10245	transcription start site region 10245	49 bp upstream
Tssr15247	transcription start site region 15247	206 bp upstream
Tssr15248	transcription start site region 15248	146 bp upstream
Tssr15249	transcription start site region 15249	72 bp upstream