rs50092782 SNP Detail

Summary

• ID
  rs50092782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127646460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAAGGA GGATGAGAAG
  AAGAAGAAAT AAATATACTA ATATCTATCA AGATTCAGTG AACTATAACA GATTTAAATT
  TCAGTGTTCA AAAGCAGTTT TGCTGGAGTG GAACAATGGT CATCTCTTCC CAATTGGTCT
  GACTTCATTC CCGCCCCCCC CCCCAAGGAT TTTAAAAACT GCATCAGAAG TCGCATGACT
  Y
  GTGAAGATGT TAACCGTCTG GCCCTTTACG GATATGGCTC ACTCTCGTGC ATTTATTGCT
  GAGGCAGCAA AGGCTGCTCT GCTTTCTAAG GCGACTTCCC CAGTAAGGAA GACGGAAAAT
  GGCAGCTGTT ATAGAAAACA GTCGCCATCT GTCTTCCCTC CTTATACAGA GCCTTTCAAG
  TGTTTTGATA AGACATCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873119	ENSMUSSNP2477634	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320957506	CHEV_3_127555729	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50092782					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127646460 () rs orientation: forward

Symbol	Name	Function Class
Rr584883	regulatory region 584883	801 bp distal
Rr584884	regulatory region 584884	within coordinates
Rr584885	regulatory region 584885	593 bp proximal
Rr584886	regulatory region 584886	701 bp proximal