rs50092140 SNP Detail

Summary

• ID
  rs50092140
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107112108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACAAGGCTG GTTCAGATCT ACAGCCAGGC TGGCATCCAG
  TGATGGGCAT GTCCATGTGG AGTCTTATGT CCAGTTCCTC TGACTCTGGC GAAAGACAAT
  K
  TCTTTAGAGT CCAGATTTCT AATCTCATTT GTCTCTGTTG GCTGTGCGGA GGACTTCTGG
  GCATCCTGTG GACTCAGGAA AACACTTTTC TCTATTATT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135583294	ENSMUSSNP2793768	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320864593	CHEV_3_107007710	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50092140					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107112108 () rs orientation: forward

Symbol	Name	Function Class
Rr582930	regulatory region 582930	1163 bp proximal
Rr582931	regulatory region 582931	1387 bp proximal
Rr582932	regulatory region 582932	1700 bp proximal