rs50089759 SNP Detail

Summary

• ID
  rs50089759
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTAGTAC TCTTTTATCT
  TCCATATCTT ACGCTTCCAG AGGTTGGGGT GAGCCCAGAA TTTGGGGGAA CCAACATACA
  GGCAGTAGCA GGGTATCTGC TCTTTGGAGG CTGAAGGAGA GAAGTCATTT CCTCACCCTT
  TCCTCGTGGA GACTGACGAC ACTCCTTGGC TTGTGAATAT TCTCACAGCA AGACTTCCTG
  R
  CTGTGCCTCT CCTGCCTTCC TTTTACCTAC AGAGACCCTT AGAATATTAA ATTTGTGCCT
  AACTAGTAGC ACAGGATAAT CTTCCGGGCA CAAAATACTT GATCACATCT GCACAATCTG
  TCTCCAAAAG AAGGGGTATG GATATTTCAA AAAGCCATTT ATTCAGCCTG CCATGAGGGG
  TATAGAGTCA TGGAAGATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146246462	ENSMUSSNP4658224	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321100064	CHEV_4_44087683	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50089759					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1744 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591150	regulatory region 591150	1547 bp distal
Rr591151	regulatory region 591151	1814 bp distal
Rr591152	regulatory region 591152	625 bp distal
Tssr41485	transcription start site region 41485	1790 bp upstream