rs50082378 SNP Detail

Summary

• ID
  rs50082378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122206588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGGGGAC ACTTCAATTT
  CGCTCTTGAG TGCCTACCTC TACACAGATC AGGGGTGTTG CTGTCAGCCT GACATTGCTG
  TATTAGGCTG CTGGCTGCGG TTCCCCCAGC TACCCATATC CCTTCTGCCT CAGGACTAAG
  CAGCTTATCC CATTCCCATT ACACCCCCGT CTTCCCACGG GGTAACTCAG GGTTTAAACT
  R
  AGCCCTTCCC CATCAGATGG TCAAGTGTGG CACAGAGTCT CCCTACATTT GTTCCTCTGA
  TTTTCCATAG TTATGTGGAT ATATACATCC ATATTATATG CATATCTGAA ATTCCATCCT
  CTCCTTCATT GTCATGAGCA TCACTGGTCT CTTGATGTAG CCTCTGAGTC CCACATTACA
  GGGATCCTCT GCCGGAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135741098	ENSMUSSNP3125756	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320911410	CHEV_3_122115857	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50082378					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122206588 () rs orientation: forward

Symbol	Name	Function Class
Rr584323	regulatory region 584323	1044 bp distal
Rr584324	regulatory region 584324	803 bp proximal