rs50077600 SNP Detail

Summary

• ID
  rs50077600
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58411052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCCACTC CCTGGGCCAA
  ACATACAACC CATCACAATC ATCAAAGAGA GTCAGAACAG GAACTCAAGC AGGTCTGGAA
  TCTGGAGGCA AGAACAGATG CAGAGGCCAT GGAGGGGGTG CTGCTTACCG CCTTGCTCTC
  CTTGGCTTGC TTAGCCTGCT TTCTACAGAA CAGAAGACCA CCAACCAGGG ATGACACCAC
  W
  GTGGGTTAGG TTCTCCCCAT TGATCACTAA TTGAGAAAAT GCCTTATAGC TGGATCTCAT
  AAAGGTATTT CCTCAGCTGA AGCTCCTTCC TCTCTGACTT TGTGTCTGGT TGACTCATAA
  AGCCAGCCAG TATACTGGTT TATCCTGAAA TTCTTTTCTG TCTTTCCCTG AGAATAGCTC
  CAAAGAATGG CTGCTCCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss135206841	ENSMUSSNP6850791	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs50077600					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58411052 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	282 bp upstream
Rr375034	regulatory region 375034	398 bp upstream
Rr577237	regulatory region 577237	1404 bp distal
Rr577238	regulatory region 577238	288 bp proximal
Tssr29204	transcription start site region 29204	1446 bp downstream