rs50075305 SNP Detail

Summary

• ID
  rs50075305
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127598945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTATAA GAAATCAGGG
  TGTCCATAAT GATACAATGA TAACTAATGT CCTCTCCTCC TTGCTAGGGT GATGCCAGAT
  AAATGGTGGC CTGGACTCTT ATCTCTGCCC AGTGGTAAGA AGGCTGTGAG GGGGTGTTGC
  CTAAGGTAAT CCTCACATTA CTTATTACTG AGATAGGAAG TAATCTCCAG ATCAGAGACA
  R
  AGGAACCTGA GACCTGGAGA TGTTAAGGAA CCCAACCGGT CACCCAGGAG GAGCAGGGCC
  CACCCAGAAT CATCTCACTC CAATCTGCCC TCTGTCTGCC TCTCTGTACC CCCTGGGAGC
  TTATGCTCTT GACTTGGGTT TTTATTTTCC CCTATTTAAG ACTGAGATTA CCTATTTTCT
  TGTTAGCTTT TGAGACGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147540753	ENSMUSSNP1098450	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320500685	CHEV_2_127582761	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50075305					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127598945 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	141 bp proximal
Tssr26143	transcription start site region 26143	1307 bp upstream