rs50072964 SNP Detail

Summary

• ID
  rs50072964
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29536913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCTCCTGGGA CAGCCACGTA GACTGATATA GCAATGTGGT
  GGCCCCAGCA GGCCTGGCTG GCTACAGGGT TCTGAGTCTC TTGGAAGCAG AGTCGGGGTA
  A
  CAAGAACATA GAAGAGAGGC CTGAGGTTTC ATTTCCCCTA AACATTTTCT ATTTGAGCAC
  CACCTTCTGG TGATTTCTCT AATATGCCTG GCTGGGAAGA A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133091807	ENSMUSSNP1503214	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50072964					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29536913 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Irf5	interferon regulatory factor 5			Intron
				mRNA-UTR
Rr627591	regulatory region 627591			within coordinates
Rr627592	regulatory region 627592			54 bp proximal
Tssr55278	transcription start site region 55278			1531 bp downstream
Tssr55279	transcription start site region 55279			850 bp downstream
Tssr55280	transcription start site region 55280			145 bp upstream