rs50072201 SNP Detail

Summary

• ID
  rs50072201
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117668616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAATTG TACCTCACCC
  AAGGAAGAAA CCCTCGGCAT GATAAGGAAG TCGGACCCAG CTGTCCCCAG TTCCCATGAC
  CCTGGGGCTC CATAGCAGGA GCTCACAACA TGACCCAGGC ATTCTTTCCC TTAGAATGAT
  ACGACCCTTG GCTGATGTGT TGTTAGTGAC ATTGGTTTCA TCATGATGTT TTTTTTTTTT
  W
  TTTAAGATTT ATTTATTGGT TATATGTAAG TACACTGTCG CTGTCTTCAG ACACTCCAGA
  AGAGGGAGTC AGATCTCCTT ACAGATGGTT GTGAGCCACC ATGTGGTTGC TGGGATTTGA
  ACTCCGGACC TTCGGAAGAG TAGTCGGGTG CTCTTACCCA CCAGCCCGTG ATGGTTCTTT
  AACAACAACC CAGAGAAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147294297	ENSMUSSNP2885171	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50072201					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117668616 () rs orientation: forward

Symbol	Name	Function Class
Gm68791	predicted gene, 68791	1424 bp downstream
Rr598215	regulatory region 598215	1599 bp distal
Rr598216	regulatory region 598216	279 bp distal
Rr598217	regulatory region 598217	52 bp proximal
Rr598218	regulatory region 598218	1477 bp proximal