rs50071959 SNP Detail

Summary

• ID
  rs50071959
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152496198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCACCCT CACGAGACAT
  TTATTTGCAG CTTATAAAAG GAAAATGTAG TTTGGATGCA AAGGTGATAA AATTGAATCA
  AAAATTAGAA GTAAACCTCA AAATAATGTA TGCATTTATG GTTTCGATTT TTATATATTC
  TCTGCTGCTT GAAAGTGAGG AGCCCCACAG CAGGCATAAC TCATCCCCTC CTGCTTACCC
  M
  GTGCTTTCTG TCAAGGTCCG TGCTGCTAAC GTGGCTTCCA TTATGCATGT TGTGTAGCAG
  TTACAGTTAC TGTGGGAATC ATCATTCAAA GTTCTGATGC TTGCGTTTCT GGAATCTTTA
  CAACAAATAT GAATTAACAT ATTATCCTTT CCTATTTCTT TGTACCAAAA TTAAGCCCAT
  CTATGGTAGA TGCTGTTCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss61101180	NES16612830	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs50071959					SNP	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61101180	NES16612830	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152496198 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587606	regulatory region 587606			1339 bp proximal