rs50069821 SNP Detail

Summary

• ID
  rs50069821
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113600213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTTTAAATAA TAGCATAGGT GGGCCCGGCA GCGGTGGTAC
  TCAGCTTTTA TATCAACACT TGGGAGGCAG AGGCAGGAGA TTGGAGGTCA GACTGGTCTA
  M
  AGAGTGAGTT CCAAGAGAGC TGGAGCTACC CAGAGAAACC CTGTCTTGAA AAACCAAAAA
  GCAAAGGCAG AAGGGGAAAT ATGGCAAGCC CGTGGAGATC T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133564905	ENSMUSSNP5977986	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50069821					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113600213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	419 bp proximal
Rr636555	regulatory region 636555	329 bp proximal
Tssr58233	transcription start site region 58233	736 bp upstream
Tssr58234	transcription start site region 58234	796 bp upstream
Tssr58235	transcription start site region 58235	874 bp upstream
Tssr58236	transcription start site region 58236	1415 bp upstream
Tssr62461	transcription start site region 62461	276 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	742 bp upstream