rs50068267 SNP Detail

Summary

• ID
  rs50068267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:45385949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAAATCCC TATTAATGTA
  ATTTGATTAT TACTATGTCT CTGCTGGAAA GAGTTAATAT GTTTGAGGAC GAATCATATT
  TTGAATTAAT GATCAGAACT GCAAATGTAA TCAATGTATT TTTTTTCATA ATAAAGCAAC
  CACAAAAATC ACACCAAATA CCATTCATTT GCTTAAATGT CACTTTTAGA ATAATTTTTT
  Y
  CTTTTTTTTT TTTCTTCAAA AACTTTACCC TTATTGAATG TGCATTGGGC TTGTGGACCT
  CCAATATACA TGATGTACAT TGTTGTTTGT TCTATCTAGC TCCAGTAACT ATTTAGAGAA
  TTCTTTTTAA GGTTATGTTT CCACATGAAG AGTCAGTTTT TAAAAAATAG CATAAAATAG
  CATTATTTTC TTTTATTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135075830	ENSMUSSNP5949827	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50068267					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:45385949 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700027H10Rik	RIKEN cDNA 1700027H10 gene			within coordinates
Pcdh10	protocadherin 10			Intron
				Noncoding-Transcript-Variant
Rr576058	regulatory region 576058			225 bp proximal
Tssr29010	transcription start site region 29010			1333 bp upstream