rs50066277 SNP Detail

Summary

• ID
  rs50066277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148686024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTATCGTA TCCATCTTTT
  TGTAAACATA CACAGCCTAT CAGTCTCCAG TGTGCCTTGT GTCGATTCAC AGGAAGCCTT
  CAGCAAGCAC CTGGCAACGA ATGGCTGGAA CATGGGACCA GAATCCAGCA CTACCAAAGG
  ATAGTCCCAA CAGCCACAAG AAAACTGAGG ACTTTAGGAA CGAAAACAAC TTTAAGGATC
  R
  AAAAATGAGG AGGGCAAGGA AGAAGCTGGG GATGGGACAA TAGGGAGAGC CTTGCTTAGT
  AGCAACTAGA AGGCTCAATT CCTAGCACTG AGGGAAGGGG GGCGGAAATT AGTGGAGAAA
  AGGATGTGTA AGAAAAGTAA TTTCAAATCA ATAACCACAG CACCGAGCAC TAAAAGACAG
  ATGCTTTTAA TGCAGAAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321017017	CHEV_3_148643352	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50066277					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss136065928	ENSMUSSNP4661220	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148686024 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587237	regulatory region 587237	1469 bp distal
Rr587238	regulatory region 587238	1699 bp distal
Rr587239	regulatory region 587239	1450 bp proximal